Index

_

__iter__() (yatsm.algorithms.yatsm.YATSM method) __len__() (yatsm.algorithms.yatsm.YATSM method)

_get_dynamic_rmse() (yatsm.algorithms.ccdc.CCDCesque method) _get_model_rmse() (yatsm.algorithms.ccdc.CCDCesque method)

A

after (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.mapping.utils.find_indices parameter) algo (yatsm.classifiers.diagnostics.kfold_scores parameter) (yatsm.cli.train.algo_diagnostics parameter) (yatsm.plots.plot_feature_importance parameter) algo_diagnostics() (in module yatsm.cli.train) AlgorithmNotFoundException

alpha (yatsm.algorithms.postprocess.commission_test parameter) amplitude (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.prediction.get_coefficients parameter) arg_date() (in module yatsm.cli.options) arg_job_number() (in module yatsm.cli.options)

B

band (yatsm.cli.pixel.plot_results parameter) (yatsm.plots.plot parameter) bands (yatsm.algorithms.yatsm.YATSM.fit_models parameter) (yatsm.io.read_image parameter) (yatsm.io.readers.read_image parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.mapping.utils.find_result_attributes parameter) before (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.mapping.utils.find_indices parameter) behavior (yatsm.algorithms.postprocess.omission_test parameter)

bisquare() (in module yatsm.regression) (in module yatsm.regression.robust_fit) blue (yatsm.vegetation_indices.EVI parameter) blue_index (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter)

C

c (yatsm.regression.bisquare parameter) (yatsm.regression.robust_fit.bisquare parameter) (yatsm.regression.robust_fit.mad parameter) cache_file (yatsm.cli.train.is_cache_old parameter) cache_filename (yatsm.cache.read_cache_file parameter) (yatsm.cache.write_cache_file parameter) callback_dict() (in module yatsm.cli.options) can_monitor (yatsm.algorithms.ccdc.CCDCesque attribute) CCDCesque (class in yatsm.algorithms.ccdc) cfg (yatsm.cli.pixel.plot_results parameter) (yatsm.cli.train.algo_diagnostics parameter) (yatsm.cli.train.find_result_attributes parameter) (yatsm.cli.train.get_training_inputs parameter) (yatsm.config_parser.convert_config parameter) (yatsm.plots.plot_feature_importance parameter) cfg_to_algorithm() (in module yatsm.classifiers) classifier (yatsm.cli.classify.classify_line parameter) classify_line() (in module yatsm.cli.classify) coefs (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.utils.find_result_attributes parameter)

col (yatsm.classifiers.diagnostics.SpatialKFold parameter) (yatsm.cli.train.algo_diagnostics parameter) commission_test() (in module yatsm.algorithms.postprocess) config (yatsm.algorithms.yatsm.YATSM.plot parameter) (yatsm.algorithms.yatsm.YATSM.setup parameter) config_file (yatsm.classifiers.cfg_to_algorithm parameter) (yatsm.config_parser.parse_config_file parameter) consecutive (yatsm.algorithms.ccdc.CCDCesque parameter) convert_config() (in module yatsm.config_parser) copy_dict_filter_key() (in module yatsm.utils) CRAN_spline() (in module yatsm.phenology.longtermmean) crit (yatsm.algorithms.postprocess.omission_test parameter) (yatsm.masking.multitemp_mask parameter) (yatsm.masking.smooth_mask parameter) csvfile_to_dataframe() (in module yatsm.utils)

D

d (yatsm.config_parser.expand_envvars parameter) (yatsm.io.helpers.mkdir_p parameter) (yatsm.io.mkdir_p parameter) (yatsm.utils.date2index parameter) dataset_config (yatsm.cache.get_line_cache_name parameter) (yatsm.cache.test_cache parameter) (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter) (yatsm.utils.get_output_name parameter) date (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.mapping.utils.find_indices parameter) date2index() (in module yatsm.utils) date_format (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) (yatsm.utils.csvfile_to_dataframe parameter) date_index_end (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) date_index_start (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) dates (yatsm.algorithms.ccdc.CCDCesque.fit parameter) (yatsm.algorithms.yatsm.YATSM.fit parameter) (yatsm.algorithms.yatsm.YATSM.plot parameter) (yatsm.algorithms.yatsm.YATSM.predict parameter) (yatsm.algorithms.yatsm.YATSM.preprocess parameter) (yatsm.algorithms.yatsm.YATSM.score parameter) (yatsm.cli.pixel.plot_DOY parameter) (yatsm.cli.pixel.plot_TS parameter) (yatsm.cli.pixel.plot_VAL parameter) (yatsm.utils.date2index parameter)

design_info (yatsm.cli.pixel.plot_results parameter) design_matrix (yatsm.regression.design.design_to_indices parameter) (yatsm.regression.design_to_indices parameter) design_to_indices() (in module yatsm.regression) (in module yatsm.regression.design) df (yatsm.algorithms.yatsm.YATSM.setup parameter) distribute_jobs() (in module yatsm.utils) dtype (yatsm.io.read_image parameter) (yatsm.io.read_line parameter) (yatsm.io.readers.read_image parameter) (yatsm.io.readers.read_line parameter) dynamic_rmse (yatsm.algorithms.ccdc.CCDCesque parameter)

E

end (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) estimator (yatsm.algorithms.ccdc.CCDCesque parameter) (yatsm.algorithms.postprocess.refit_record parameter) (yatsm.algorithms.yatsm.YATSM parameter) evi (yatsm.phenology.longtermmean.scale_EVI parameter) EVI() (in module yatsm.vegetation_indices)

evi_index (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) evi_scale (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) exit_on_missing (yatsm.cli.train.get_training_inputs parameter) expand_envvars() (in module yatsm.config_parser)

F

features (yatsm.regression.design.design_to_indices parameter) (yatsm.regression.design_to_indices parameter) filename (yatsm.cli.classify.classify_line parameter) (yatsm.cli.classify.try_resume parameter) filenames (yatsm.utils.get_image_IDs parameter) files (yatsm.io.read_pixel_timeseries parameter) (yatsm.io.readers.read_pixel_timeseries parameter) find_indices() (in module yatsm.mapping.utils) find_packaged_regressor() (in module yatsm.regression) (in module yatsm.regression.packaged) find_result_attributes() (in module yatsm.cli.train) (in module yatsm.mapping.utils) find_results() (in module yatsm.utils)

find_stack_images() (in module yatsm.io) (in module yatsm.io.helpers) first (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.get_change_date parameter) fit() (yatsm.algorithms.ccdc.CCDCesque method) (yatsm.algorithms.yatsm.YATSM method) (yatsm.phenology.longtermmean.LongTermMeanPhenology method) fit_models() (yatsm.algorithms.yatsm.YATSM method) fitopt (yatsm.algorithms.postprocess.refit_record parameter) folder_pattern (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) freq (yatsm.plots.plot parameter) (yatsm.regression.transforms.Harmonic parameter) funcs (yatsm.cli.console.open_interpreter parameter)

G

get_change_date() (in module yatsm.mapping) (in module yatsm.mapping.changes) get_change_num() (in module yatsm.mapping) (in module yatsm.mapping.changes) get_classification() (in module yatsm.mapping) (in module yatsm.mapping.classification) get_coefficients() (in module yatsm.mapping) (in module yatsm.mapping.prediction) get_image_attribute() (in module yatsm.io) (in module yatsm.io.readers) get_image_IDs() (in module yatsm.utils) get_line_cache_name() (in module yatsm.cache) get_line_cache_pattern() (in module yatsm.cache)

get_magnitude_indices() (in module yatsm.mapping.changes) get_output_name() (in module yatsm.utils) get_phenology() (in module yatsm.mapping) (in module yatsm.mapping.phenology) get_prediction() (in module yatsm.mapping) (in module yatsm.mapping.prediction) get_training_inputs() (in module yatsm.cli.train) green (yatsm.masking.multitemp_mask parameter) (yatsm.masking.smooth_mask parameter) green_band (yatsm.algorithms.ccdc.CCDCesque parameter) group_years() (in module yatsm.phenology.longtermmean)

H

halfmax() (in module yatsm.phenology.longtermmean)

Harmonic (class in yatsm.regression.transforms)

I

idx_slope (yatsm.algorithms.ccdc.CCDCesque parameter) ignore (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) image_ds (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) image_filename (yatsm.io.get_image_attribute parameter) (yatsm.io.read_image parameter) (yatsm.io.readers.get_image_attribute parameter) (yatsm.io.readers.read_image parameter) image_IDs (yatsm.cache.read_cache_file parameter) (yatsm.cache.update_cache_file parameter) (yatsm.cache.write_cache_file parameter) (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter) image_pattern (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) images (yatsm.cache.update_cache_file parameter) (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter)

indices (yatsm.algorithms.postprocess.omission_test parameter) input_file (yatsm.utils.csvfile_to_dataframe parameter) interlaced (yatsm.utils.distribute_jobs parameter) interval (yatsm.phenology.longtermmean.group_years parameter) is_cache_old() (in module yatsm.cli.train) is_integer() (in module yatsm.utils) iter_records() (in module yatsm.utils)

J

job_number (yatsm.utils.distribute_jobs parameter)

K

keep_regularized (yatsm.algorithms.postprocess.refit_record parameter) kf_generator (yatsm.classifiers.diagnostics.kfold_scores parameter) kfold_scores (yatsm.plots.plot_crossvalidation_scores parameter)

kfold_scores() (in module yatsm.classifiers.diagnostics) kwargs (yatsm.algorithms.yatsm.YATSM parameter)

L

line (yatsm.cache.update_cache_file parameter) (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter) (yatsm.utils.get_output_name parameter) location (yatsm.io.find_stack_images parameter) (yatsm.io.helpers.find_stack_images parameter) (yatsm.utils.find_results parameter)

LongTermMeanPhenology (class in yatsm.phenology.longtermmean)

M

mad() (in module yatsm.regression.robust_fit) magnitude (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.get_change_date parameter) make_pickles() (in module yatsm.regression.pickles.serialize) make_plots (yatsm.cli.train.algo_diagnostics parameter) mask_band (yatsm.algorithms.yatsm.YATSM.preprocess parameter) mask_values (yatsm.algorithms.yatsm.YATSM.preprocess parameter) (yatsm.classifiers.diagnostics.SpatialKFold_ROI parameter) max_values (yatsm.algorithms.yatsm.YATSM.preprocess parameter) maxiter (yatsm.masking.multitemp_mask parameter) (yatsm.masking.smooth_mask parameter) memorize_chunk() (yatsm.regression.transforms.Harmonic method) memorize_finish() (yatsm.regression.transforms.Harmonic method)

message (yatsm.cli.console.open_interpreter parameter) min_obs (yatsm.algorithms.ccdc.CCDCesque parameter) min_rmse (yatsm.algorithms.ccdc.CCDCesque parameter) min_values (yatsm.algorithms.yatsm.YATSM.preprocess parameter) mkdir_p() (in module yatsm.io) (in module yatsm.io.helpers) model (yatsm.algorithms.postprocess.refit_record parameter) (yatsm.cli.console.open_interpreter parameter) (yatsm.cli.pixel.plot_results parameter) (yatsm.phenology.longtermmean.LongTermMeanPhenology.fit parameter) monitor() (yatsm.algorithms.ccdc.CCDCesque method) mpl_cmap (yatsm.cli.pixel.plot_DOY parameter) (yatsm.cli.pixel.plot_VAL parameter) multitemp_mask() (in module yatsm.masking)

N

n (yatsm.utils.distribute_jobs parameter) n_fold (yatsm.cli.train.algo_diagnostics parameter) n_folds (yatsm.classifiers.diagnostics.SpatialKFold parameter) (yatsm.classifiers.diagnostics.SpatialKFold_ROI parameter) n_images (yatsm.cache.get_line_cache_name parameter) n_year (yatsm.masking.multitemp_mask parameter) name (yatsm.regression.find_packaged_regressor parameter) (yatsm.regression.packaged.find_packaged_regressor parameter) nband (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter)

nbands (yatsm.cache.get_line_cache_name parameter) (yatsm.cache.get_line_cache_pattern parameter) ncol (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter) ndays (yatsm.algorithms.ccdc.CCDCesque attribute) ndv (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) new_cache_filename (yatsm.cache.update_cache_file parameter) nir (yatsm.vegetation_indices.EVI parameter) nir_index (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter)

O

old_cache_filename (yatsm.cache.update_cache_file parameter) omission_test() (in module yatsm.algorithms.postprocess) open_interpreter() (in module yatsm.cli.console) opt_exampleimg() (in module yatsm.cli.options)

opt_resultdir() (in module yatsm.cli.options) ordinal (yatsm.phenology.longtermmean.ordinal2yeardoy parameter) ordinal2yeardoy() (in module yatsm.phenology.longtermmean) out_format (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.get_change_date parameter)

P

parse_config_file() (in module yatsm.config_parser) pattern (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.utils.find_results parameter) periods (yatsm.phenology.longtermmean.scale_EVI parameter) plot() (in module yatsm.plots) (yatsm.algorithms.yatsm.YATSM method) plot_crossvalidation_scores() (in module yatsm.plots) plot_DOY() (in module yatsm.cli.pixel) plot_feature_importance() (in module yatsm.plots) plot_results() (in module yatsm.cli.pixel) plot_TS() (in module yatsm.cli.pixel)

plot_type (yatsm.cli.pixel.plot_results parameter) plot_VAL() (in module yatsm.cli.pixel) pred_proba (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_classification parameter) predict() (yatsm.algorithms.yatsm.YATSM method) prefix (yatsm.algorithms.postprocess.refit_record parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.mapping.utils.find_result_attributes parameter) preprocess() (yatsm.algorithms.yatsm.YATSM method) px (yatsm.io.read_pixel_timeseries parameter) (yatsm.io.readers.read_pixel_timeseries parameter) py (yatsm.io.read_pixel_timeseries parameter) (yatsm.io.readers.read_pixel_timeseries parameter)

Q

q_max (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) q_min (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) qa (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter)

qmax (yatsm.phenology.longtermmean.scale_EVI parameter) qmin (yatsm.phenology.longtermmean.scale_EVI parameter)

R

random_state (yatsm.classifiers.diagnostics.SpatialKFold parameter) (yatsm.classifiers.diagnostics.SpatialKFold_ROI parameter) read_cache (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter) read_cache_file() (in module yatsm.cache) read_image() (in module yatsm.io) (in module yatsm.io.readers) read_line() (in module yatsm.io) (in module yatsm.io.readers) read_pixel_timeseries() (in module yatsm.io) (in module yatsm.io.readers) reader (yatsm.cache.update_cache_file parameter) record (yatsm.mapping.utils.find_indices parameter) record_template (yatsm.algorithms.ccdc.CCDCesque attribute) (yatsm.algorithms.yatsm.YATSM attribute) records (yatsm.utils.iter_records parameter) recresid() (in module yatsm.regression) (in module yatsm.regression.recresid) red (yatsm.vegetation_indices.EVI parameter) red_index (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) refit_record() (in module yatsm.algorithms.postprocess)

regex (yatsm.cache.get_line_cache_pattern parameter) remove_noise (yatsm.algorithms.ccdc.CCDCesque parameter) reps (yatsm.cli.pixel.plot_VAL parameter) reset() (yatsm.algorithms.ccdc.CCDCesque method) resid (yatsm.regression.bisquare parameter) (yatsm.regression.robust_fit.bisquare parameter) (yatsm.regression.robust_fit.mad parameter) result_location (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) result_prefix (yatsm.cli.pixel.plot_results parameter) results (yatsm.mapping.changes.get_magnitude_indices parameter) (yatsm.mapping.utils.find_result_attributes parameter) retrain_time (yatsm.algorithms.ccdc.CCDCesque parameter) rmse() (in module yatsm.regression.diagnostics) roi (yatsm.classifiers.diagnostics.SpatialKFold_ROI parameter) row (yatsm.cache.get_line_cache_name parameter) (yatsm.cache.get_line_cache_pattern parameter) (yatsm.classifiers.diagnostics.SpatialKFold parameter) (yatsm.cli.train.algo_diagnostics parameter) running (yatsm.algorithms.ccdc.CCDCesque attribute)

S

scale (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) scale_EVI() (in module yatsm.phenology.longtermmean) score() (yatsm.algorithms.yatsm.YATSM method) screening (yatsm.algorithms.ccdc.CCDCesque parameter) screening_crit (yatsm.algorithms.ccdc.CCDCesque parameter) seasons (yatsm.cli.pixel.plot_TS parameter) series (yatsm.algorithms.yatsm.YATSM.predict parameter) set_np_thread_vars() (in module yatsm.cli.main) setup() (yatsm.algorithms.yatsm.YATSM method) shuffle (yatsm.classifiers.diagnostics.SpatialKFold attribute) (yatsm.classifiers.diagnostics.SpatialKFold parameter) (yatsm.classifiers.diagnostics.SpatialKFold_ROI attribute) (yatsm.classifiers.diagnostics.SpatialKFold_ROI parameter) slope_test (yatsm.algorithms.ccdc.CCDCesque parameter)

smooth_mask() (in module yatsm.masking) span (yatsm.masking.smooth_mask parameter) (yatsm.regression.recresid parameter) (yatsm.regression.recresid.recresid parameter) span_index (yatsm.algorithms.ccdc.CCDCesque attribute) span_time (yatsm.algorithms.ccdc.CCDCesque attribute) spar (yatsm.phenology.longtermmean.CRAN_spline parameter) SpatialKFold (class in yatsm.classifiers.diagnostics) SpatialKFold_ROI (class in yatsm.classifiers.diagnostics) start (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) swir1 (yatsm.masking.multitemp_mask parameter) (yatsm.masking.smooth_mask parameter) swir1_band (yatsm.algorithms.ccdc.CCDCesque parameter)

T

test_cache() (in module yatsm.cache) test_indices (yatsm.algorithms.ccdc.CCDCesque parameter) (yatsm.algorithms.yatsm.YATSM parameter) test_labels (yatsm.plots.plot_crossvalidation_scores parameter) threshold (yatsm.algorithms.ccdc.CCDCesque parameter) total_jobs (yatsm.utils.distribute_jobs parameter) train() (yatsm.algorithms.ccdc.CCDCesque method) training_file (yatsm.cli.train.is_cache_old parameter)

TrainingDataException transform() (yatsm.regression.transforms.Harmonic method) trawl_replace_keys() (in module yatsm.cli.pixel) try_jit() (in module yatsm.accel) try_resume() (in module yatsm.cli.classify) TSLengthException

U

update_cache_file() (in module yatsm.cache)

V

valid_int_gt_zero() (in module yatsm.cli.options) validate_cache (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter)

variables (yatsm.cli.console.open_interpreter parameter)

W

warn_on_empty (yatsm.mapping.changes.get_change_date parameter) (yatsm.mapping.changes.get_change_num parameter) (yatsm.mapping.classification.get_classification parameter) (yatsm.mapping.get_change_date parameter) (yatsm.mapping.get_change_num parameter) (yatsm.mapping.get_classification parameter) (yatsm.mapping.get_coefficients parameter) (yatsm.mapping.get_phenology parameter) (yatsm.mapping.get_prediction parameter) (yatsm.mapping.phenology.get_phenology parameter) (yatsm.mapping.prediction.get_coefficients parameter) (yatsm.mapping.prediction.get_prediction parameter) (yatsm.utils.iter_records parameter) write_cache (yatsm.io.read_line parameter) (yatsm.io.readers.read_line parameter)

write_cache_file() (in module yatsm.cache) write_output() (in module yatsm.utils)

X

X (yatsm.algorithms.ccdc.CCDCesque.fit parameter) (yatsm.algorithms.yatsm.YATSM.fit parameter) (yatsm.algorithms.yatsm.YATSM.fit_models parameter) (yatsm.algorithms.yatsm.YATSM.plot parameter) (yatsm.algorithms.yatsm.YATSM.predict parameter) (yatsm.algorithms.yatsm.YATSM.preprocess parameter) (yatsm.algorithms.yatsm.YATSM.score parameter) (yatsm.classifiers.diagnostics.kfold_scores parameter) (yatsm.cli.train.algo_diagnostics parameter) x (yatsm.masking.multitemp_mask parameter) (yatsm.masking.smooth_mask parameter) (yatsm.phenology.longtermmean.CRAN_spline parameter) (yatsm.phenology.longtermmean.halfmax parameter)

X (yatsm.regression.recresid parameter) (yatsm.regression.recresid.recresid parameter) x (yatsm.regression.transforms.Harmonic parameter)

Y

Y (yatsm.algorithms.ccdc.CCDCesque.fit parameter) (yatsm.algorithms.yatsm.YATSM.fit parameter) (yatsm.algorithms.yatsm.YATSM.fit_models parameter) (yatsm.algorithms.yatsm.YATSM.plot parameter) (yatsm.algorithms.yatsm.YATSM.preprocess parameter) (yatsm.algorithms.yatsm.YATSM.score parameter) (yatsm.cache.write_cache_file parameter) y (yatsm.classifiers.diagnostics.kfold_scores parameter) (yatsm.classifiers.diagnostics.SpatialKFold parameter) (yatsm.cli.pixel.plot_DOY parameter) (yatsm.cli.pixel.plot_TS parameter) (yatsm.cli.pixel.plot_VAL parameter) (yatsm.cli.train.algo_diagnostics parameter) Y (yatsm.masking.multitemp_mask parameter) (yatsm.masking.smooth_mask parameter) y (yatsm.phenology.longtermmean.CRAN_spline parameter) (yatsm.regression.diagnostics.rmse parameter) (yatsm.regression.recresid parameter) (yatsm.regression.recresid.recresid parameter) YATSM (class in yatsm.algorithms.yatsm) yatsm (module) (yatsm.algorithms.postprocess.commission_test parameter) (yatsm.plots.plot parameter) yatsm.accel (module) yatsm.algorithms (module) yatsm.algorithms.ccdc (module) yatsm.algorithms.postprocess (module) yatsm.algorithms.yatsm (module) yatsm.cache (module) yatsm.classifiers (module) yatsm.classifiers.diagnostics (module) yatsm.cli (module) yatsm.cli.cache (module) yatsm.cli.changemap (module) yatsm.cli.classify (module) yatsm.cli.console (module) yatsm.cli.line (module) yatsm.cli.main (module) yatsm.cli.map (module) yatsm.cli.options (module) yatsm.cli.pixel (module) yatsm.cli.train (module) yatsm.config_parser (module) yatsm.errors (module) yatsm.io (module) yatsm.io.helpers (module) yatsm.io.readers (module)

yatsm.io.stack_line_readers (module) yatsm.log_yatsm (module) yatsm.mapping (module) yatsm.mapping.changes (module) yatsm.mapping.classification (module) yatsm.mapping.phenology (module) yatsm.mapping.prediction (module) yatsm.mapping.utils (module) yatsm.masking (module) yatsm.phenology (module) yatsm.phenology.longtermmean (module) yatsm.plots (module) yatsm.regression (module) yatsm.regression.design (module) yatsm.regression.diagnostics (module) yatsm.regression.packaged (module) yatsm.regression.pickles (module) yatsm.regression.pickles.serialize (module) yatsm.regression.recresid (module) yatsm.regression.robust_fit (module) yatsm.regression.transforms (module) yatsm.utils (module) yatsm.vegetation_indices (module) yatsm.version (module) year_interval (yatsm.phenology.longtermmean.LongTermMeanPhenology parameter) years (yatsm.phenology.longtermmean.group_years parameter) yhat (yatsm.regression.diagnostics.rmse parameter) yield_filename (yatsm.utils.iter_records parameter) ylim (yatsm.plots.plot parameter)